Alistair Miles
Alistair Miles
Raising this issue to discuss API for selecting data from a given genome region, which could be either a whole contig or a contiguous region within a contig. Breaking this...
Using bcolz 0.10.0 built against c-blosc 1.7.0. If the bitshuffle filter is used with a carray, data are mangled when taking a slice of the carray. See example at the...
### What is your issue? Hi folks, I'm working on a mini-tutorial introducing xarray for some folks in our genetics community and noticed something slightly confusing about the typical pictures...
This is somewhat related to both #5 and #3 but slightly different. Basically I would like a persistent cache for use when working in a jupyter notebook. The motivation is...
This issue is a placeholder for gathering thoughts and discussion on requirements for storage of columnar tables (a la bcolz). The idea is to explore how the functionalities currently available...
Implement Group.put() for convenience rather than Group.array(..., overwrite=True)?
It would be great to implement benchmarking with [ASV](https://github.com/airspeed-velocity/asv) or similar so we catch any changes that introduce a performance regression.
#### Problem description ``zarr.tree()`` is designed to work with either zarr Group or h5py File. When passed an h5py File the icons rendered in the jupyter notebook are wrong for...
Maybe useful to have methods "find" and "findall" on Group class to search for members (descendants?) matching some name query.
Some drivers like the CSV source support parameters which can then be interpolated into the urlpath. This doesn't seem to work with the zarr_cat driver. E.g., I have a catalog...