pysamstats Docker image

[fjukstad]

Hey!

Great project! Lately I've been working with analyses in Docker containers so I put together a pysamstats Docker image. Here's the Dockerfile if you want something to build on for an 'official' pysamstats image.

Example: If a user has a /data/example.bam file that he wants to run through pysamstats. Then the user can just run

$ docker run -v /data:/data -t fjukstad/pysamstats -t coverage /data/example.bam

and get the results printed to stdout. This only requires the user to install Docker.

PS: The Docker image I put together could probably be refactored etc. to make it smaller!

Cheers, Bjørn

[alimanfoo]

Thanks for letting me know, very cool!