aertslab
aertslab
scenicplus
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
SCENICprotocol
A scalable SCENIC workflow for single-cell gene regulatory network analysis
ScoMAP
ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.
SCopeLoomR
R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters and markers, ...
GRNBoost
Scalable inference of gene regulatory networks using Apache Spark and XGBoost
PUMATAC
Pipeline for Universal Mapping of ATAC-seq
install_aspera_connect
Install latest version of Aspera Connect and show example how to use it for downloading sequening data.
nextcloud_share_url_downloader
Download files from and list content of NextCloud (password protected) share directly from the command line without needing a webbrowser.
single_cell_toolkit
Tools for correcting single cell barcodes for various scATAC-seq techniques.