Lukas Heumos
Lukas Heumos
No, because my project does not support Python 3.10 yet and the building of the documentation requires it to be installed (for sphinx-click etc) I think. But I'll keep it...
Yeah, I see. But @1kastner seems to use 3.9 for his RTD build and it looks fine for him now? I am not sure what is going on in my...
> It would be good to get someone working with time series data to try this out and see if it meets their needs. we do technically. If we detect...
@imipenem can you help here?
Thought so as well. We didn't run into any issues.
Sure: ``` import ehrapy.api as ep adatas = ep.dt.mimic_3_demo(encoded=False, mudata=False) print(adatas["INPUTEVENTS_CV"].obs) adata = adatas["INPUTEVENTS_CV"] # This may take 5-20 minutes ep.pp.knn_impute(adata) adata_encoded = ep.pp.encode(adata, autodetect=True) ep.io.write("test.h5ad", adata_encoded) ``` I would...
> > I have the suspicion that the datetimes are somewhere just read as strings and then mapped to categoricals. > > That seems to be the case. > >...
It is. But just to make the expectations clear. We are implementing a quick and dirty version in ehrapy because we need to move fast in the beginning. We might...
@Hrovatin I'll check out the docstring. Could you please add a quick test next to https://github.com/scverse/anndata/blob/f563dadad3fcf08d637a5ce1fb42c84d26481f8f/anndata/tests/test_base.py#L469= for this, please? I'll then review your code. Thank you!
@ivirshup do you approve the feature? I can review the PR then.