Lukas Heumos

@gtca actually, the discussion is open https://github.com/scverse/scanpy/issues/2281 This discussion is also relevant for muon/mudata because nf-core needs updated containers for the nf-core scrnaseq pipeline.

> ... which they don't want to build themselves?.. Yes, rightfully so. > On that note, can't we just use [GitHub Container Registry](https://github.blog/2020-09-01-introducing-github-container-registry/)? The question isn't hosting, but keeping the...

Maybe a result of: ``` /home/lukas/miniconda3/envs/single_cell_analysis/lib/python3.8/site-packages/diffxpy/testing/det.py:1620: RuntimeWarning: divide by zero encountered in log self._logfc = np.log(mean_x1) - np.log(mean_x0) ``` ?

@davidsebfischer this is an environment error that we cannot figure out how to fix. The very same notebook works with my existing environment, but crashes when @niklaslang and myself create...

Yeah, that's possible. @niklaslang could try `dask==2021.4.0`. This was reported to work with sparse 0.9.1. See https://github.com/theislab/diffxpy/issues/194 The latest dask release is dask 2021.11.2. Would fit because it was released...

I encountered the same error. Is there any update?

Does this suggest the same problem? https://github.com/luiskuhn/biomedical_semantic_segmentation/runs/1366466968?check_suite_focus=true I am confused, since there should be a repository secret set with the required value.

@portlek Well, please keep it open for me :)

@gaborbernat I think I ran into this issue. Reproducible example (please use a fresh environment! Python 3.8 is recommended.) ``` pip install poetry git clone --recursive https://github.com/theislab/ehrapy/ cd ehrapy make...

> A PR addressing this would be welcome. I am afraid that I haven't found the root cause yet.