Lukas Heumos
Lukas Heumos
This would be excellent. I'd be very happy about this
Alternative would be to host a static site which links to the docs again. Like scvitools https://github.com/YosefLab/scvi-tools-site
We have a form this with out cohort tracker now. Should we also implement sankeys? Not important for the revisions @eroell
> After trying your example, I either get “No columns detected” for automatic mode, or when I specify the column name (taken from subject.var.iloc[-1].name ) I get the error AttributeError:...
Probably in a separate package
`java -jar synthea-with-dependencies.jar -p 5 -c synthea.properties` ``` ⋊> ~/Desktop cat synthea.properties exporter.ccda.export = false exporter.fhir.export = true exporter.csv.export = true ``` generates csv files.
This could also be a cool option: https://github.com/ratschlab/HIRID-ICU-Benchmark/blob/master/icu_benchmarks/synthetic_data/generate_simple_fake_data.py
``` import random import uuid from datetime import datetime, timedelta from faker import Faker fake = Faker() # Define some example FHIR resources and their fields patient_fields = ['id', 'birthDate',...
More complex ``` import random import uuid from datetime import datetime, timedelta from faker import Faker from itertools import cycle fake = Faker() # Define some example FHIR resources and...
``` import pytest def test_generate_all_resources(): resources = generate_all_resources(10) assert len(resources) == 10 * (5 + 1 + 1 + 1 + 1) for resource in resources: assert resource['resourceType'] in ['Patient',...