Lukas Heumos comments

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                                            Lukas Heumos

Better support for DE in scverse

Closing this now in favor of more specific issues.

Synchronous dataloader write fails

I think that a Filelock might help here. If not, one needs to pre-download the datasets

Streamlining Distance API

Discussed a few things with @yugeji 1. I need to find a way to make the looping easier 2. Some distances like MMD could make use of specific parameters. Currently...

AttributeError: module 'scanpy.preprocessing' has no attribute 'scrublet'

@bingy007 please report back if you can reproduce this with the latest scanpy versions.

Update type hinting

Think they're actually 3.10+. Just use ruff which implements the pyupgrade rule and import from the future

ImportError: cannot import name '_get_column_indices' from 'sklearn.utils for pre-release CI in imbalanced learn

Reported upstream: https://github.com/scikit-learn-contrib/imbalanced-learn/issues/1080

ImportError: cannot import name '_get_column_indices' from 'sklearn.utils for pre-release CI in imbalanced learn

Fixed upstream. Waiting for release.

Two-sample Kolmogorov-Smirnov test to compare pre and post imputation

https://link.springer.com/article/10.1186/s12874-023-02125-x sorry I should have included it.

Two-sample Kolmogorov-Smirnov test to compare pre and post imputation

And maybe add this to the bias notebook?

Some docstrings have typos or interfere with Sphinx

Cool, thank you so much! Oct 9, 2023 4:53:57 PM Eljas Roellin ***@***.***>: > > *Description of feature* > > Hey! > > Some minor adjustments in the Docstrings might...