ggtree
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YuLab-SMU
:christmas_tree:Visualization and annotation of phylogenetic trees
A suggestion to add interactive variants of some of geoms such as `geom_nodepoint_interactive()`, `geom_tiplab_interactive()` etc to work with [ggiraph](https://davidgohel.github.io/ggiraph/).
### Prerequisites + [ ] Have you read [Feedback](https://guangchuangyu.github.io/ggtree/#feedback) and follow the [guide](https://guangchuangyu.github.io/2016/07/how-to-bug-author/)? * [ ] make sure your are using the latest release version * [ ] read the...
Hi, I am using the most updated ggtree. When I tried to zoom in to specific clade using getsubtree, it is said the function not found. I am wondering whether...
I use 4.4.1 R version and latest ggtree version from BiocManager Example of the issue: 
### Prerequisites + [x] Have you read [Feedback](https://guangchuangyu.github.io/ggtree/#feedback) and follow the [guide](https://guangchuangyu.github.io/2016/07/how-to-bug-author/)? * [x] make sure your are using the latest release version * [x] read the [documents](https://yulab-smu.github.io/treedata-book/) * [x]...
The `ggtree` package is an excellent tool for drawing phylogenetic trees. However, a common limitation among many ggplot2 extensions for tree structures is that they typically confine a single tree...
When using `geom_tiplab()`, it would be useful to adjust the transparency of pictures and lines separately. For example, when using: ```r test_tree
Dear Dr. Guangchuang Yu, I have a question, and I hope you can help me. Thank you. I am trying to plot a heatmap on a phylogeny, but I want...
**Description** Added support for [XStringSet](https://bioconductor.org/packages/release/bioc/html/Biostrings.html) objects (i.e., `BStringSet`, `AAStringSet` and `DNAStringSet`) for function `msaplot()` in response to #626. The problem came up because an [old example on R-Bloggers](https://www.r-bloggers.com/2016/08/ggtree-for-microbiome-data/) does not...
### Prerequisites + [x] Have you read [Feedback](https://guangchuangyu.github.io/ggtree/#feedback) and follow the [guide](https://guangchuangyu.github.io/2016/07/how-to-bug-author/)? * [x] make sure your are using the latest release version * [x] read the [documents](https://yulab-smu.github.io/treedata-book/) * [x]...
