ggtree
ggtree copied to clipboard
YuLab-SMU
:christmas_tree:Visualization and annotation of phylogenetic trees
with the new version of Rstudio when I run this code I got this error (in the last versions it worked ok): ``` p_tree = ggtree(treeFile) + theme(plot.margin = unit(c(0,...
I want to know how to get the node coordinates of the deformed ggtree. The coordinates obtained by ggtree::fortify() are valid in a square tree, but I don't know how...
When build ggtree version 3.6.0, two dependent function "warning_wrap" and "new_data_frame" were used to be imported from "ggplot2". However, these two functions were removed from the newest version of ggplot2...
### Prerequisites + [x] Have you read [Feedback](https://guangchuangyu.github.io/ggtree/#feedback) and follow the [guide](https://guangchuangyu.github.io/2016/07/how-to-bug-author/)? * [x] make sure your are using the latest release version * [x] read the [documents](https://yulab-smu.github.io/treedata-book/) * [x]...
### Prerequisites + [x] Have you read [Feedback](https://guangchuangyu.github.io/ggtree/#feedback) and follow the [guide](https://guangchuangyu.github.io/2016/07/how-to-bug-author/)? * [x] make sure your are using the latest release version * [x] read the [documents](https://yulab-smu.github.io/treedata-book/) * [x]...
Hi ! I was wondering if there was a way to control x-axis ticks limits and breaks on geom_fruit ? For example, on the plot attached, I have a tree...
I meet some errors when I plot a Phylogenetic tree with 3874 tips and 2850 internal nodes. ``` > aa Phylogenetic tree with 3874 tips and 2850 internal nodes. Tip...
Dear all, I have the following problem when I use gheatmap with ggtree: Error in `guides_train()`: ! Guide `colorbar` cannot be used for fill_new. Run `rlang::last_error()` to see where the...
Is there a function like geom_edgelab() for providing labels to edges?
Hi, I'm using the R package ggtree to plot a phylogenetic tree of 9 plant species and outgroups. I have successfully produced the phylogenetic tree I was interested in, however,...
