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YuLab-SMU
:christmas_tree:Visualization and annotation of phylogenetic trees
Please ignore this post.
Hi, I'm trying to annotate a very large gene tree. I have multiple occurrences of the same taxa distributed across the tree. The internal node names contain that information [&&NHX:S=CladeName]....
Not sure why, but gheatmap cuts the top row and last column in my combined tree and heatmap `primer_nosZ
The `gheatmap()` function docs do not state how the `data` parameter MUST be formatted in order to match the data in the table to the tip labels in the tree...
Hi, I just want to know how to increase the width in the scale bar using theme_tree2, I'm using the default parameters for theme_tree2. to generate the tree I use...
HI 余老师： 在使用ggtree绘图的过程中，当我设置layout = "equal-angle"时出现了错误： 我使用的具体代码如下： ``` nwk
Hello ggtree team, I have a special case for co-phylogeny (add links between 2 trees): I have 2 copies of the same gene with some divergency for the gene tree,...
Hi There, I'm having some issues with the collapse function during my analysis. I want to collapse a node, but I am unable. First, there is an issue when I...
This question has been posted in a number of forums but the solutions are unacceptable and/or non-functional. Perhaps one of the most basic needed functions in ggtree is to color...
I am trying to add a geom_hilight layer to identify two clades in a phylogeny. The tree is then aligned to a heatmap with cowplot. The alignment works well without...
