clusterProfiler
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YuLab-SMU
:bar_chart: A universal enrichment tool for interpreting omics data
Hello, I meet a problem: I get several different gseKEGG results for the same data with the same code . I try to make 'nPerm = 10000 ' , it...
这两个值的默认参数为 10 到500 但是教程中描述为100-500 那具体是多少是有统计学意义呢 或者建议设置为多少 难道是以结果为准，就是如果出了我想要的结果就行。数值设置为多少都无所谓
Hello, I'm having significant trouble obtaining significant GO BP hits using my protein list as background (from human neutrophils) and I'm unsure why. Regardless of the p value cutoff I...
Hi, I do overrepresentation analysis for Arabidopsis. If I use the "org.At.tair.db" library,. My question: it is mandatory to use the "universe" file? or can I run the analysis without...
### Discussed in https://github.com/YuLab-SMU/clusterProfiler/discussions/462 Originally posted by **sbbmu** May 3, 2022 Dear Dr. Yu, I am recently working on some pathway analysis and found your wonderful work including packages such...
Hi I'm using clusterprofiler package for KEGG enrichment for my RNA-seq data in cancer samples. there are 61 genes and my code for enrichment : `kegg_32
Hello! I am doing the analysis of Go terms for Arabidopsis. I have my data. I added genes Up and Dowm regulates separately. For the Go enrichment analysis I use...
> ego2 Hello，how could I fix the problem? My package version is 4.2.2. Gratefully appreciate.
Hello, I know that the comparecluster function is able to investigate pathway (KEGG, REACTOME) and GO (enrichGO) enrichment between multiple gene clusters which can then be visualized via emapplot, cnetplot...