clusterProfiler
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YuLab-SMU
:bar_chart: A universal enrichment tool for interpreting omics data
Hi, Prof. Yu, Thanks for your software to make it convenient for me to do analysis. But i meet some unsloved probblems and need your help. I can use R/clusterProfiler...
- add `gson_GO_mapper()`; - update author list and document.
### Prerequisites + [ ] Have you read [Feedback](https://guangchuangyu.github.io/clusterprofiler/#feedback) and follow the [guide](https://guangchuangyu.github.io/2016/07/how-to-bug-author/)? * [ ] make sure your are using the latest release version * [ ] read the...
Currently trying to perform an enrichment using enricher and a self-curated TERM2GENE list and self defined universe of genes. However even though I am specifying a universe it seems to...
I have used the enrichGO function and I have obtained the object which contains Ontology, p.adjust and so on. The problem that I have is that when a category is...
Hi, I want to clusterProfiler to do GO enrich analysis. First , I use AnnotationForge to create the Orgdb package because it's non-model specie. It works well. Then I use...
I propose to develop a new function that uses a combination of `simplify` and `getGOLevel` to reduce the redundancy of GO terms. *The main idea is that if two terms...
Hi Guangchuang, I would like to only plot a subset of results from compareCluster. ``` c
Hi there, I aim to goplot() `ego` output, but it keeps giving me a "?" asking for some text input as below. What is interesting was the ego object `egoGOEnrichGeneSet`...
When I emapplot the selected results of clusterprofiler, I got the "Error in if (n == 1) { : the condition has length > 1". Can you help me to...
