gseKEGG problem

[zym826]

Prerequisites

• [ ] Have you read Feedback and follow the guide?
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• [ ] Make a reproducible example (e.g. 1)
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[zym826]

code: GSEA_KEGG <- gseKEGG(GSEA_input, organism = "hsa", pvalueCutoff = 0.05) Error: Error in download.KEGG.Path(species) : 'species' should be one of organisms listed in 'http://www.genome.jp/kegg/catalog/org_list.html'... In addition: Warning message: In utils::download.file(url, quiet = TRUE, method = method, ...) : URL 'http://rest.kegg.jp/link/hsa/pathway': Timeout of 300 seconds was reached

I don't know how to solve it

[huerqiang]

@zym826 This is a network problem. You can try again later.

[zym826]

But I try many times,it always appear this error.

[GuangchuangYu]

@huerqiang

URL 'http://rest.kegg.jp/link/hsa/pathway': Timeout of 300 seconds was reached

in this case, please throw an error message:

Error: Network is unreachable. 
In addition: Warning message:
In utils::download.file(url, quiet = TRUE, method = method, ...) :
URL 'http://rest.kegg.jp/link/hsa/pathway': Timeout of 300 seconds was reached