TideHunter

TideHunter copied to clipboard

Prevent overlapping repeats

5

Any suggestions on how to prevent overlapping repeat units? for example i only want unique repeats that do not overlap or contain any other repeats thanks!

palakpsheth

Core dump when using HPC-kmer

4

hey there getting a core dump only when using the `-H` option. Full cmd: ``` ~/TideHunter-v1.5.4/bin/TideHunter -H --kmer-length 8 --window-size 5 --min-copy 3 --min-period 41 --min-len 41 --out-fmt 2 --thread...

palakpsheth

Help - Illegal instruction (core dumped)

1

Hey, I've got an issue with TideHunter, it always produces the error 'Illegal instruction (core dumped)'. I already tried to install it with conda, install it with conda in an...

tamara-nano

TideHunter -f 2 with no result

4

Hi, I installed TideHunter by conda. chr9_sub.fa length is 0.5Mbp. The server memory size is 128G. TideHunter version is 1.5.3. When I used command "TideHunter -f 2 chr9_sub.fa > chr9.cons.out"...

xuzaoxu

Numbers of reads in fasta/fastq file

4

Hi Yan, I ran the test scenario and I ran your test script and I ran the tool on a fasta that contains only one fasta-record with an assembled chr22....

DamarisLa

subPos & match score feature request

9

Hi Gao, I tried to retrieve the repeated subunits from the long read and feed it into other consensus calling methods (such as Medaka by ONT or majority voting). According...

zztin

Illegal instruction (core dumped)

4

Hi, I love that you have made this tool. installed using conda and I ran this command "TideHunter -u barcode18_test.fastq > units3.fa" and get a file full of the split...

fgponce

Usage Inquiry

3

Hi there, I am interested in this amazing tool. I am wondering whether there are any limitations regarding the length of each tandem repeat. Specifically, I would like to detect...

HLHsieh