TideHunter

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Prevent overlapping repeats

5

Any suggestions on how to prevent overlapping repeat units? for example i only want unique repeats that do not overlap or contain any other repeats thanks!

palakpsheth

Core dump when using HPC-kmer

4

hey there getting a core dump only when using the `-H` option. Full cmd: ``` ~/TideHunter-v1.5.4/bin/TideHunter -H --kmer-length 8 --window-size 5 --min-copy 3 --min-period 41 --min-len 41 --out-fmt 2 --thread...

palakpsheth

Help - Illegal instruction (core dumped)

1

Hey, I've got an issue with TideHunter, it always produces the error 'Illegal instruction (core dumped)'. I already tried to install it with conda, install it with conda in an...

tamara-nano

TideHunter -f 2 with no result

4

Hi, I installed TideHunter by conda. chr9_sub.fa length is 0.5Mbp. The server memory size is 128G. TideHunter version is 1.5.3. When I used command "TideHunter -f 2 chr9_sub.fa > chr9.cons.out"...

xuzaoxu

Numbers of reads in fasta/fastq file

4

Hi Yan, I ran the test scenario and I ran your test script and I ran the tool on a fasta that contains only one fasta-record with an assembled chr22....

DamarisLa

subPos & match score feature request

9

Hi Gao, I tried to retrieve the repeated subunits from the long read and feed it into other consensus calling methods (such as Medaka by ONT or majority voting). According...

zztin