Numbers of reads in fasta/fastq file

[DamarisLa]

Hi Yan, I ran the test scenario and I ran your test script and I ran the tool on a fasta that contains only one fasta-record with an assembled chr22. Both lead to outputs. (is am interested in results in tabular format). I was glad that the tests ran.

However when I run it with da fasta-file that contains reads from the whole genome (6mio reads/records) its doesn't even start to analyze, I always immediately stops. My system calls it "illegal instructions" (even though it's the same instructions used in the successful test case.

I there a limitation to the size of a fasta-file or the number of reads by your tools?

Best regards Damaris