Vijini Mallawaarachchi

Hello @Laura-Alex, Thanks for your interest in GraphBin. There can be cases where the same contig identifier appears in two or more samples. So you should rename the contigs in...

Hello @Laura-Alex, I think you can use an assembler such as Flye and do a population assembly using the contigs from all the MEGAHIT assemblies and get a non-redundant set...

Hello @mant-ux, Thank you for the question. We followed the notations of binning results and the definitions from CONCOCT, d2sBin and SolidBin papers. ARI considers only the contigs being binned...

Dear @jolespin, Currently, GraphBin handles only one binning result (from one tool). Multiple binning results from multiple tools cannot be provided in one run. Thank you!

Hi @nvpatin, Currently, GraphBin does not make use of the coverage information from coassemblies. Thank you very much for the suggestion. We will definitely work on it. Thank you!

Helllo, I’ll get back to you soon after the holidays! Thanks!

Hi @cerebis, Thanks for bringing this issue to our attention. I've attached the supplementary material document here. [MetaBCC_LR_Supplementary_Material.pdf](https://github.com/anuradhawick/MetaBCC-LR/files/14135029/MetaBCC_LR_Supplementary_Material.pdf) Please let us know if you have any questions. Thanks!

Hello @tpriest0, Thank you for your interest in GraphBin2. The line where this error is coming has been commented out according to the current version of the code. Can you...

Hello @tpriest0, Can you share with me the exact command you used to run GraphBin2? Thank you!

Thanks for the question! We are planning to add support for more assembly tools (including MEGAHIT) in the future. I will keep the issue open until I update the code....