Vijini Mallawaarachchi

Hi @jonye123, Sorry, it's been a while since you posted this issue. Was this issue fixed? Can you please try the latest version of Phable (v1.3.3) and let me know...

Closing the issue for now. Please re-open if needed.

Hi @pdec, I think you can set the tmp directory for CoverM using the `TMPDIR` env variable. You can set it as follows. ``` TMPDIR=. ``` Got it from [https://github.com/wwood/CoverM/issues/41](https://github.com/wwood/CoverM/issues/41)....

Closing this issue. Please reopen if required.

Hi @xtc2002, Thanks for your interest in Phables. Have you properly installed Gurobi and set up the academic license? Case 3 won’t be resolved if Gurobi is not properly set...

Hi @xtc2002, Thanks for sharing the data. I'll have a look and get back to you soon. Can you please confirm the Gurobi version you are using?

Hi @xtc2002, Sorry for the delay in getting back to you. Were you able to solve this issue? I checked the data you shared with me and the assembly is...

Closing this issue for now. Please re-open if needed.

Hi @linxingchen, Thanks for the quick reply! (1) I removed the Cobra output folder and re-ran on the same sample. (2) Yes, I've run Cobra 3 times and every time...

Hi @linxingchen, Here is the file you requested. [COBRA_potential_joining_paths.txt](https://github.com/linxingchen/cobra/files/14611315/COBRA_potential_joining_paths.txt) Let me know if you need further details. Thanks for taking a look at this issue.