Vijini Mallawaarachchi

Hello @nick-youngblut, Thank you for the question. GraphBin2 was originally designed to recover short contigs as much as possible. Hence, we did not put introduce a filter for short contigs....

Hello @yuyuyu-fy, Can you let me know what files you use as input and their format (copy-paste the output from `head `), especially the format of the abundance file? Thank...

Hello @yuyuyu-fy, I'm extremely sorry for the late reply. Can you share the files you are using so I can run a test? Thank you!

Hi @josefawelling, Thanks for your interest in MetaCoAG. Can you show me the first few lines of your `--graph` file and `--contigs` file? Also, can you try running metacoag with...

Hi @ZarulHanifah, Sorry about the delay in getting back to you. Were you able to sort out this error? Thanks, Vijini

Closing issue due to inactivity. Please re-open if needed.

Closing issue due to inactivity. Please re-open if needed.

Hi @ZarulHanifah, Thanks for your interest in Phables. I see that your reads file is named as `PAU29885_skip_fe307bda_418464a3_1.fastq.gz`. Phables uses [Koverage](https://github.com/beardymcjohnface/Koverage) to map reads and the pattern `*_1.*` expects that...

Hi @ZarulHanifah, I hope you were able to run Phables on your long-read data. I'm closing this issue. Please reopen it if needed. Thanks!

Hi @SwapnilDoijad, If you are running Phables using short reads, the input expects paired-end reads (not single-end reads), because paired-end reads mappings are required for the genome resolution. Phables has...