Cannot find gfa2fasta.py

[lewhiteside]

Hi there, Im fairly new to running python scripts so apologies if I have missed something obvious.

I have installed GraphBin2 by first downloading GraphBin2 v1.1, unzipping the file and moving into the GraphBin2 directory. I then ran the following commands:

conda env create -f environment.yml
conda activate graphbin2

Since I am using metaflye to generate contigs, I ran :

python gfa2fasta.py -h

However, I get the following error message:

python: can't open file '/usr/bin/gfa2fasta.py': [Errno 2] No such file or directory

Could someone please help by pointing me in the direction of where I am going wrong? Thank you in advance!

[Vini2]

Helllo,

I’ll get back to you soon after the holidays!

Thanks!

[Vini2]

gfa2fasta is no longer available as GraphBin2 now supports original contigs from Flye.

Closing this issue.