Vijini Mallawaarachchi

Hello @zoey-rw, We are currently working on integrating MEGAHIT support for GraphBin2. The feature will be available soon. Cheers!

Hi @nick-youngblut, You are correct. GraphBin2 expects all the contigs available in the *.paths to be provided for binning. I will add a fix so users can filter out contigs...

Hello @nmb85, Thank you very much for your interest in MetaCoAG! I haven't tested MetaCoAG on datasets having more than a couple of hundred thousand contigs. I don't know how...

Hi @nmb85, I'm so sorry I couldn't get back to you regarding this issue. Is everything sorted? Were you able to parallelise the step? I tested your suggested method and...

Hello @wn835166087! Thanks for posting this issue. From your pipeline, it seems that you are using the original contig file `assembly.fasta` from the Flye output which is not supported at...

Hello @wn835166087, You can refer to [Before using Flye/Miniasm assemblies for binning](https://github.com/Vini2/GraphBin/tree/master/support#before-using-flyeminiasm-assemblies-for-binning) from the GraphBin documentation. I have provided a script named [`flye_miniasm_gfa2fasta.py`](https://github.com/Vini2/GraphBin/blob/master/support/flye_miniasm_gfa2fasta.py) which can generate the `edges.fasta` file. Once...

Hi @masterhan666, Just remove the first line (starting with `Contig final.contigs.fa/...`) of the abundance file and try running again. MetaCoAG expects the abundance file without the header row. Let me...

`gfa2fasta` is no longer available as GraphBin2 now supports original contigs from Flye. Closing this issue.

Hi @wn835166087, GraphBin2 has been updated to handle original flye contigs. Feel free to give it a try. Closing this issue.

Hello @tpriest0, GraphBin2 has been updated to handle the original Flye contigs. Feel free to give it a try. Closing this issue.