Simon Pearce

icon location Bioinformatician/Mathematician, working at NeoGenomics. Nextflow Ambassador and member of the nf-core Maintainers team.

Results 276 comments of Simon Pearce

Add batching in mgikit

Leaving this open because there are comments from @UtaHar about the need for batching when many samples are included (see #348).

nf-test for pilon

Please add a stub and test for the stub as mentioned by @itrujnara

nf-test for pilon

@itrujnara , I've added the stub and a second test, if you want to take a look again.

split the fastq and fastq_idx outputs from cellranger mkfastq module

Hi @gordond88 , you need to update the snapshots for the tests by running: `nf-core modules test cellranger/mkfastq -u` You'll also need to update the meta.yml file to reflect the...

split the fastq and fastq_idx outputs from cellranger mkfastq module

Closing in favour of #9204

terminated for an unknown reason -- Likely it has been terminated by the external system

@fan040 , I've had this recently, with only the .command.run and .command.sh existing. It means that your scheduler tried to schedule a job but something happened to make it fail...