Simon Pearce
Simon Pearce
@mribeirodantas , is this ready yet?
On nf-core we have the nf-core/modules repo. Each of these have tests written in `nf-test`. However, quite a lot of these tests use other modules in a `setup` block, for...
Hi @diegomscoelho , do you need some help?
@diegomscoelho , do you plan to come back to this?
> WIP > > When running nf-core modules test gemma/lmm, keep getting error highlighting midas module dependency, which should not be needed You can ignore that, that's an unrelated issue...
@fischer-hub , it looks like there is just minor tweaks needed here, are you able to get them finished off?
Bump for @fischer-hub
> Im not sure I understand the linter failure `Error: An error occurred trying to start process '/home/runner/externals/node20/bin/node' with working directory '/home/runner/_work/modules/modules'. Argument list too long` to me doesn't look...
Thanks @vagkaratzas, we'll merge in #9213 then.
Yeah, I think you'd want to include a tool that works on fastq files, not bam files. [ntsm](https://github.com/JustinChu/ntsm) is an option that is more recent than [ngscheckmate](https://github.com/parklab/NGSCheckMate) and may be...