Simon Pearce
Simon Pearce
> @SPPearce - @drpatelh is concerned that we take care to ensure that the new input bed file is compatible with other reference inputs (coordinates, 'chr' prefixes etc). Can we...
> > The stub test is failing because there is no stub here, can you please add one. > > That's not actually why it's failing. [In the absence of...
@znorgaard , please note that the module version has been updated in the meantime.
Hmmm, malt seems to be failing to get the input file from aws s3.... One for the task force I guess @jfy133
> > @nf-core/core do we need special tokens or keys on the modules repo to be available to access S3 stuff? > > What do you need? The tests are...
I think that the pip issue should have been resolved in #6588
Linting for tools that require pip should be worked on in the hackathon: https://github.com/nf-core/tools/issues/3461
This PR is close to finished, just waiting on the pip linting issue I think.
@famosab , made the requested change.
I made nf-tests for ngscheckmate in the modules repo if it helps