cellpose
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MouseLand
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
Win8.1 cannot start cellpose because of the PyQt5 compatibility problem, The solution is : change `from PyQt5.Qt import * ` to ``` import PyQt5 from PyQt5 import * ``` in...
Looking for how to export the "Cellprob" channel from cellpose. Can this be exported as a tiff file? This is a z stack. 
Hi, depending on the size of the stack and the value set for anisotropy, cellpose can fail to complete because during a resizing step one of the dimensions is set...
Hi there, and thanks for your support. While working on [a different project](https://github.com/fractal-analytics-platform/fractal), with @mfranzon and @jluethi we noticed an unexpected increase of RAM usage during subsequent runs of cellpose...
I'm using cellpose to segment brightfield sections (DAB stained). All of the pretrained models seem to want the LUT inverted, which is easy enough to do for training data, and...
When launching a segmentation on a stack with the _do_3D_ parameter set to False, the value set for the parameter _min_size_ is ignored, and actually the defaul value of 15...
@carsen-stringer would it be possible to specify a simple input image file on the command line (instead of a whole directory)?
Playing around with the GUI on a workstation running Windows 11 I cannot resize any of the windows. For the main window containing the image this is not a huge...
Dear all, I have been trying to use the command line to train Cellpose. However, I kept getting "IndeError: list index out of range". In addition, the flow images look...
