cellpose
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MouseLand
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
Hi Cellpose team, I've found that Cellpose can be very useful applied to large images (e.g. histology tissue). When the GPU version of the mask computation is run, this can...
i am trying to run some images but i am getting this error: File "c:\Users\user\Desktop\Cellpose python\Screen_9\RUN-CELLPOSE_3_CODE.py", line 34, in model = models.Cellpose(gpu=True, model_type="cyto3") File "C:\Users\user\anaconda3\envs\napari-env\lib\site-packages\cellpose\models.py", line 100, in __init__ self.pretrained_size...
**Describe the bug** I have reinstalled cellpose 2. When I try to draw masks I right click and I see the red circle. I draw the mask and finish at...
**Install problem** Since I couldnt edit missegmented cells with my current installation, I created a fresh environment and installed cellpose[gui]. Then I just opened an image and tried to run...
Trying to just change the diameter to 75 and click cyto3 and this happens twice:  
**Is your feature request related to a problem? Please describe.** We love making Cellpose models, like, a lot, but especially on the trickier ones, it can be hard to remember...
[BUG]
ImportError: cannot import name 'train' from 'cellpose' (/usr/local/lib/python3.10/dist-packages/cellpose/__init__.py)
**Install problem** The app wouldn't start, even though I uninstalled and reinstalled it a few times to validate my steps. **Environment info** ``` (cellpose) [barc@cn113 ~]$ conda list # packages...
**Describe the bug** In cellpose 3 GUI, during the model training step, the diameter is reset to 30 and fewer ROIs are detected in the field of view. Not sure...
Hi, in Cellpose 2 you could use the training argument --save_every xx and --save_each to automatically save after a given number of epochs, which worked very nicely. Unfortunately, the last...
