MouseLand
CellposeTraining: IndexError: list index out of range
Dear all,
I have been trying to use the command line to train Cellpose. However, I kept getting "IndeError: list index out of range". In addition, the flow images look weird too....
Here are my test images https://github.com/chenzhao2016/TestImages/blob/main/Test_images.rar
Here is the error message
I would appreciate it if someone could give me some suggestions. Thank you very much!
it looks like your _masks images might be empty (the diameter is nan). did you save the training masks as indices 0=no cell, 1=cell 1, 2=cell 2,... etc
We changed the mask images to instance segmentation and indexed each mask by grayscale.
I'm also having this issue... I'm on mac. Made the mask, saved NPY file... followed exactly online tutorial on here
What I figured out is if all your training images have fewer than 5 cells, then you'll produce this error. If you have at least 1 image with more than 5 cells segmented then its fine...