Moritz E. Beber

Further unification of cobrapy and cameo codebase

3

Just found that a cobrapy model defines the property `boundaries` whereas the pathway predictor expects `exchanges`. We are thinking about implementing further methods/properties here (https://github.com/opencobra/cobrapy/pull/589) but we should make sure...

This PR addresses https://github.com/altair-viz/altair_saver/issues/72

Why do some contexts contain port & adapter modules and others don't?

3

I have a doubt about the code organization. As an example, the `com.saasovation.identityaccess.infrastructure.persistence` package contains classes that implement repositories using hibernate. But a similar purpose is served by the `com.saasovation.agilepm.port.adapter.persistence`...

Benchmark comparison

11

Hi, This is more for your information and not an issue. I wanted to let you know about a comparison that I ran between `parallel-fastq-dump` and `sra-tools` `prefetch` + `fasterq-dump`....

Allow a prepared ENA metadata samplesheet as input

1

### Description of feature I've created a branch https://github.com/nf-core/fetchngs/tree/skip-runinfo where one can skip the first step. So instead of providing a list of IDs for which metadata is fetched, provide...

### Description of the bug When providing a suitable input with a file extension of `.tsv`, the pipeline fails as shown below. However, when providing the same file with extension...

Roadmap

2

Hi, Every once in a while I come back to this repo because the package looks really promising. But every time it's not ready yet. Would you be able to...

* Use web components? * Create a separate npm package?