fetchngs
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The input file extension matters
Description of the bug
When providing a suitable input with a file extension of .tsv
, the pipeline fails as shown below. However, when providing the same file with extension .txt
the pipeline runs successfully. This was unexpected to me and the error message is not helpful.
Command used and terminal output
nextflow run \
nf-core/fetchngs \
-r '1.5' \
--input 'test.tsv' \
-profile docker \
-resume
N E X T F L O W ~ version 21.10.5
Launching `nf-core/fetchngs` [golden_avogadro] - revision: c318ae12fc [1.5]
ERROR: Validation of pipeline parameters failed!
Unknown method invocation `printExceptions` on NfcoreSchema type
-- Check script '/home/moritz/.nextflow/assets/nf-core/fetchngs/main.nf' at line: 20 or see '.nextflow.log' file for more details
Relevant files
test.tsv
SRR2231363
SRR2231379
SRR2195657
System information
- Nextflow 21.10.5