Moritz E. Beber
Moritz E. Beber
When calling `nf-core create` the process can be customized interactively or using a template file. I feel like the [template documentation](https://nf-co.re/tools/#customizing-the-creation-of-a-pipeline) could be enhanced. In particular, it's not very clear...
When calling `nf-core create`, there is an option to customize what parts of the template to use. The first few times I was confused about what toggle would mean something...
Tiny nitpick: When I run `nf-core create` in an environment that does not contain prettier, I see two very similar warnings. One would be enough, IMO. ``` WARNING Prettier not...
### Description of the bug When calling `nf-core create` from a template, the name field may contain, for example, dashes which are not accepted when populating the fields interactively. This...
When calling `nf-core create` the option `--name` is described to set the pipeline name and so does the [template documentation](https://nf-co.re/tools/#creating-a-new-pipeline). However, when populating the values interactively, it asks for the...
To be added by @willmcgugan I'm adapting the `DirectoryTree` class for my own purposes and I noticed that I needed the `TreeNode` class to provide the right type hints. This...
Hi, I'm having an issue with the font in hamster. It doesn't display correctly. I'm running ``` Distributor ID: Ubuntu Description: Pop!_OS 18.04 LTS Release: 18.04 Codename: bionic ``` This...
The current GPR for [OAADC](http://bigg.ucsd.edu/models/iJN1463/reactions/OAADC) states that the associated gene is [PP_1024](https://www.uniprot.org/uniprot/Q88P29). This is wrong. It should be [PP_1389](https://www.uniprot.org/uniprot/Q88N27). This also affects the annotation of that reaction. The correct EC...
Many models in BiGG are currently annotated with a taxonomic identifier and a reference to the model itself, for example, as shown below. ```xml ``` On the website, BiGG also...
Metabolites in BiGG, where available, are annotated with InChI Keys. That is super useful. Unfortunately, the keyword does not follow the Identifiers.org standard. It describes the namespace/collection/registry as `inchi_key` but...