Moritz E. Beber
Moritz E. Beber
#### Problem description It seems like the loopless FVA code is not robust against infeasible solutions when it comes to the Gurobi solver. It does not happen with the GLPK...
#### Problem description I would like to reversibly (within a context) swap co-factors. This unexpectedly results in a `KeyError`. #### Code Sample ```python import cobra from cobra.test import create_test_model config...
@opencobra/cobrapy-core, @gregmedlock we need to make a design choice on the proposed groups and compartments PRs and I'd love to have everyone's input. My apologies that the issues were not...
Hey @opencobra/cobrapy-core, I'd like to store some meta information about the SBML that was parsed: 1. level 2. version 3. packages used (fbc, annotation, groups) The big question is where...
This is a far reaching change that I would be rather conservative about. I'm happy to probe the community but maybe the ability to change the global configuration to include...
There have been discussions in #805 and #811 about handling infinity values on bounds and thus basically introducing free or partially free reactions. Overall the consensus seems to be that...
@HAHerrmann a new issue seemed more fitting. > I have been using the ACHR sampler using cobra both in Matlab and Python. In Python when plotting the flux distributions it...
Making a cobrapy 1.0 release is a chance to introduce some breaking API changes, look at the current package design, and organize what belongs in cobrapy and what doesn't. This...
* [ ] Compartment class * [ ] annotations * [ ] groups * [ ] original SBML ID