Moritz E. Beber

symengine causes a linear constraint to be recognized as a quadratic one, causing an error

2

For future reference: With symengine installed the constraints added by the following function are evaluated to be quadratic, raising an error, without symengine they work perfectly. A sample error message:...

Implement a clean API to decide whether or not to extract solver values

6

Please see the source of this issue in https://github.com/opencobra/cobrapy/pull/714. Basically, we would like a clean way to decide whether or not it is okay to extract primals (and duals).

MOSEK support

2

I don't see a suggestive branch name but has there been any preliminary work to support the MOSEK Python API? Otherwise I figure there's no better way for me to...

When a process is configured with permanent caching using the [storeDir](https://www.nextflow.io/docs/latest/process.html#storedir) directive and it has stored output, it is reported as 0 of 0 tasks (see screenshot below). It's not...

Constrained reactions such as NGAM easily lead to false positive targets.