Kamil S. Jaron
Kamil S. Jaron
The y-axis is the same as it used to, but instead of giving you the coverage of the A + B in "1n coverage" units, it gives you the numerical...
Sorry folks takes so much time, we are working on getting them back. In fact, @samebdon have implemented them already, but I did manage to break them with some of...
Hi, the empty blocks are combinations of coverages that don't have even a single kmer pair. The k-mer pairs are things that are 1nt different within your dataset. They don't...
Hi Sophie, I do like to see all the strange smudgeplots. Sequencing strians/isolates and especially fungi quite often generates data without super satisfactory explanations. We had a similar case like...
Closing due to inactivity
Hi @Kendall-Lee, sorry about the slow reponse. How did you generate `FastK/B791_merge1.ktab`? If you look `ls -la` do you see the files? FastK generates all the database files as `.`...
Hi Homa, the second model does not fit the histogram, see this totorial about mecurialis: https://github.com/KamilSJaron/k-mer-approaches-for-biodiversity-genomics/wiki/Low-coverage#mercurialis The estimated genome size is the estimate of the monoploid genome size (avoiding haploid...
Yep, I have literally spent the last hour trying to figure that one out! (today I was working on my Ubuntu computer at home). It gets fixed by commenting out...
It's this commit: 130b66d
Amazing, would you consider posting here the plot?