Kamil S. Jaron comments

Results 180 comments of


                                            Kamil S. Jaron

Add JSON report file

Ok, I added those tiny changes, I would be happy to squish the commits and do the merge. I will wait for a few days in case either of you...

Add JSON report file

Hi @mschatz, sorry about the slow response. That would be nice, but I am afraid I am out of depth on the web interface. @tbenavi1 would it be easy to...

Add JSON report file

Hi @mschatz, would you mind if merge the PR and mark a release as it is? I am afraid I don't have the capacity to add it to the web...

smudge_pairs: command not found Error

Thank you @marekkokot!

Error in strsplit(.peak_sizes[, "structure"], "") : non-character argumen

Hi, This current version collapses when it gets data that have no detectable smudges. We need to fix that! The fact you see this error is nearly guaranteed meaning that...

smudgeplot.py hetkmers massive memory and walltime required

Hi, this: https://github.com/KamilSJaron/smudgeplot/issues/137#issuecomment-1899308542

Request for feedback on smudgeplot optimization and interpretation (diploid? haploid?)

Hi, I am hurry preparing for the GenomeScope workshop tomorrow, in short. `TM` - is either super homozygous diploid, or (more likely) haploid. The quality of genomescope fit is not...

Request for feedback on smudgeplot optimization and interpretation (diploid? haploid?)

WHen you run genomescope and smudgeplot they need to make sense together. The 1n coverage should be at least moreless consistent between the two. Both those software are able to...

QC genomes uring extracted k-mer pairs

Feature request of the k-mer pair extraction is #185

who is behind BioIcons?

That's very dope. I am glad to hear that... I must say, I did not notice many non-profits going .com, I noticed the trend other way around. For example https://academia.edu...