Kamil S. Jaron
Kamil S. Jaron
Hi, that's ok, genomescope questions are welcome here too. This is however, a k-mer counter question. GenomeScope does not cut the histogram, KMC does and I don't think you could...
Uh, i am not sure if you are looking at the right file. If you do `head FastK_Table.hist`, what do you see? @lilymaya I think you would really use this...
Indeed, what you need is a text file, not a binary file. Look [here](https://github.com/KamilSJaron/smudgeplot/wiki/tutorial-saccharomyces) on how to get k-mer histogram out of the k-mer database. It's a FastK utility called...
Hi @casusr, sorry about the late response. Indeed it can if the genome plays the ball (of course higher the ploidy more difficult it gets). Do you have any decaploids?...
CLosing due to inactivity
Hi Arya, What genome size do you expect for this weevil? I have a suspicion this will be actually... suprise suprise... a diploid. I will walk you through my thought...
Is there a way to convince you to rerun it with the newer version? I am sure the plot would look a lot better. The thing is - smudgeplot and...
Ugh, sorry about that! This is a bit confusing, given the coverage I would have not thought lack of smudges would be a problem for plotting. Are you sure you...
Hi @aryadevias, looking at the plot Sam generated, I am pretty sure something went wrong with making the k-mer database. That can't be the same full dataset as plotting on...
Good question. Gene, can you run PloidyPlot algorithm on fast merged files @thegenemyers?