Kamil S. Jaron

Hi @GLking123, FastK makes bunch of dotted filed files as well as the visible .ktab files, did you by any chance move them around or something? The commands you show...

Hi, this indeed look like a tetraploid. It's one of those funny cases that are hard to make anything out of - what is the species? Is it sexual? Hannes...

"The genome size reported based on flowcytometry is about 470 Mb" - what is this number? 1C? 2C? Or do you divide it by ploidy? Well the reviewer is quite...

Uh, the conda installation must be broken. I need to look into it. In the meantime, if you would install smudgeplot directly by cloning the repository and following the install...

Oh boy, to me it seems it's using a combination of the conda installation (from old times when -col_ramp was not a thing) and the new version of the python...

Dear @yaradua, what was the solution to the earlier problem? WOuld you mind posting it? It seems there is another user that is having the same issue. Regarding your current...

Hi @yaradua , I am talking about this... > (base) [Samaila@localhost AframomumAm]$ /nfs_fs/nfs4/Samaila/src/workspace/bin/smudgeplot.py hetmers -L 40 -t 4 --verbose -o Am_UDI297_k21_pairs Am_UDI297.ktab Running smudgeplot v0.4.0dev Task: hetmers Calling: hetmers (PloidyPlot...

Reagrding the error you see, it's about the version of your python. Needs to be >=3.11. See https://docs.python.org/3/library/statistics.html

Can you run smudgeplot in GitPod? If you click on this: https://gitpod.io/#https://github.com/BGAcademy23/smudgeplot it will (eventually) load you a fully functioning environment with smudgeplot directly accessible form your browsers. Nothing is...

Ah, you don't need to upload there the fastq files, you can upload them just the `.smu` files that are tiny and do the plotting there... K