Kamil S. Jaron
Kamil S. Jaron
Hi, I will give you a short answer first, and I hope I will be able to get back to you in a month or so with a lot better...
@weinei18 we now have a beta-version working with PloidyPlot backend and Smudgeplot front-end. If you would like to give it a try, I can send you the instructions how to...
I will also close this issue for now, but do get in touch in case of anything
Excellent, presumably you already have smudgeplot, but if you don't, download the repository ``` git clone https://github.com/KamilSJaron/smudgeplot.git ``` then pull also the development branch ``` git pull origin sploidyplot ```...
I reopened the issue and added it to project directory, so once you manage to get the new version plots, we can compare them here.
Oh my gosh, thank you so much for this!!! They look amazing; I recently found out the AB are possibly a tiny bit misplaced, I will be pushing more changes...
I should have thought there is a simpler solution, thanks Sujai!
Hi @bm-silva, 100% yes. -t can be picked fairly small (4 is fairly common); it's good to see the low coverage kmers in at least the coverage histogram -e is...
Of course you can, the question is if you trust it. There is no harm in doing both. The smudgeplot rule of thumb is "if it looks right, it probably...
I will close it, and will open a new feedback thread with the new release