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Illumina
Structural variant and indel caller for mapped sequencing data
Hi, I had run a MANTA (v1.5.0) as test run for 3 samples GermlineSV calling in HPC cluster by each samples in each node (3samples processed in 3 nodes). After...
Hello, Thank you for developing Manta. I am trying to merge SVs from different callers (Manta, Lumpy, Delly, Clever). I was just wondering if keeping calls with only PASS filter...
Tumor -only Analysis add option --callRegions and --exome , Variation information is only within chromosomes, not between chromosomes
Hi, [Manta_stdout.log](https://github.com/Illumina/manta/files/4234947/Manta_stdout.log) The task took three days to run WGS data(30X,illumina) , please check the log for details. Is there any way to improve it?
I try to run manta on bam-file (size 11,1 GB) and get a next error: ``` [2020-08-27T13:58:40.634587Z] [44640fb73383] [344_1] [TaskManager] [ERROR] Failed to complete command task: 'getAlignmentStats_generateStats_000' launched from master...
Hello, I know this has been requested before, but are there any immediate plans to implement an option to genotype a list of variants supplied in an input VCF (similar...
I am getting an error stating Python3 is not supported. Is Manta limited to the outdated and EOL Python2? Is there a plan to update this?
Hi, everybody, I am pretty new to coding and bioinformatics. I am using Manta as a tool to infer somatic structural variants (SVs) from a paired tumor/normal sample call. However,...
Hi, Is there a way to find out fold-back inversions from the Manta calling results? Thanks,
Hello, I have several samples with the same large deletion that was detected by Manta 1.2.2 but not Manta 1.6.0. I ran Manta 1.6.0 with `minDiploidVariantScore = 0` for debugging...
