Manta output merging

[nitha26]

Hi,

I had run a MANTA (v1.5.0) as test run for 3 samples GermlineSV calling in HPC cluster by each samples in each node (3samples processed in 3 nodes). After the run-workflow is completed it had generated "result/variants" for each 3samples in their corresponding sample folder.

1. Now i have results for 3 samples individually, (diploidSV.vcf.gz, candidateSV.vcf.gz, candidateSmallIndels.vcf.gz), how can i merge them as a single results? Whether is right thing to run manta germlineSV calling?
2. If I have 1000's of samples how run manta Germline calling for population study?

Could anyone guide me to run GermlineSV calling for multiple samples in HPC cluster (Slurm).

Thank you. Nitha

[mirkocelii]

This would be a great tool !