Patrick Roelli

Hey @suminwei2772 I would check this github page, it will help out with any specifics linked to the V1 chemistry you need. https://github.com/Teichlab/scg_lib_structs

We have made quite a few changes for the new version and our test pipeline for mixed species is not that robust so it's possible that some bugs made it...

Hello @suminwei2772 would you be ok to try the singularity approach instead of the conda one?

Hello @mcjmigdal Thanks for pointing it out. I'll keep this here until we add it to the documentation. Thanks for the tip!

The gene name selection is done in the Drop-seq tools which are written in java and not available. One hack would be to just copy the gene ID in the...

@duyck I found out there is an option to get multiple genes on top of the read in the TagReadWIthGeneExon. `ALLOW_MULTI_GENE_READS=BooleanAllow` The only problem is that it would use a...

Hello @terooatt this is an often problem encountered with different platforms, I had the same issue on my cluster server. Could you please tell us which OS is running on...

Is this fixed? Can I close it?

Hey @RichardCorbett I would rather see the log file we create that is called `clean_qc` or even better, the yield plot if you got it.

This is the one /logs/cutadapt/sample1.clean_qc.csv What about the plots folder? On Wed, Apr 1, 2020 at 4:16 PM Richard Corbett wrote: > Thanks @Hoohm , > > I don't seem...