Patrick Roelli

@heathergeiger yes, the chunking is automatic

Just a quick check, how much of this big dataset is unmapped?

Ok, new stuff coming in. Now I don't do any corrections on the unmapped and a whole bunch of other speedups. Could you try the branch `feature/barcode_translation`?

That's a good idea! Thanks for testing. Happy to see it goes faster, sad that it doesn't output anything :( I got into a tangled mess of multiple different changes...

I'm having the same issue as you. The read count is full though. Working on this bug atm.

ok! I think it's fixed. Can you try out 1.5.0-alpha tag? https://github.com/Hoohm/CITE-seq-Count/tags

Thanks, I forgot to add the packages. Part of the new big release is going to be more structure being enforced on user inputs. In this case, CSV files now...

The last changes I made broke everything again because I'm redesigning the way I deal with translation references and a filtered subset of cells mainly to deal with the confusion...

Hello @danmoore1987, why not, would you have any specific example to link here so that I can take a look?

Ok, folks, I'm on holiday!!! Let me take a look since I'm gonna work on this damn 1.5 release!!! I'll keep you posted :) Thanks for the code!