Patrick Roelli

Hello @pascal-git As of now, it is definitely not compatible. The split barcode pattern is not the big issue here, you could give those positional arguments in and it should...

Hey @pascal-git I've come up with a small script that should be able to handle funky barcode structures. You can check it out [here](https://gist.github.com/Hoohm/ddf7754b1eed8ccf2c556b7969799c3a ) I'm working on a new...

As you can see, this is not implemented yet at all. I sadly I haven't found the time to work on it since this is not some technology we use....

Thank you @TomKellyGenetics ! I'm gonna add this to the documentation :)

Hey ! Glad you enjoy the tool. I've had another user having similar issue with arabidopsis annotation. It would be nice to have some safety checks to deal with those...

Hey @dylkot ! I'm working on automating the reference and genome download generation. I'm not familiar with all possible species that people use for single cell and I would greatly...

Version 0.4 and many more things. Which functionnality would you specifically need?

Hey! If you want to try out the new feature for automatic mixed species download, merging and generation, you can test out the new 0.4 version!

are you adding `--use-conda` to the command? Because that would download and activate the envs for each rule and you should not get this kind of errors.

Is it ok with you if I take some time this weekend to review it?