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ploy-np

--save_models

1

To refine what and how to be saved.

ploy-np

- Compute the major assignment (lower or higher). - Add it as a tutorial?

ploy-np

Add "chr", "gene_name" in xpore-dataprep, xpore-diffmod

2

``` { : { : { :{ "norm_means": array of float with 2 decimal points, "read_ids": array of string. } } "chr": "gene_name": } } ```

ploy-np

xpore/scripts/xpore-dataprep: steps

3

**Goal**: Convert the output from nanopolish-eventalign which is in a read-wise format in transcriptomic coordinates to a position-wise format in genomic coordinates. **Current steps**: 1. For each read, we need...

ploy-np

Installation of all dependencies

2

ploy-np

To remove `transcript_id` and `read_id`.

ploy-np

Request for xpore result of HEK293T-rep2

20

Hi, developer. Thank you for providing a useful tool! I have run xpore and generated the result with HEK293T-WT-rep2 and HEK293T-Mettl3-KO-rep2 successfully. I wanted to check whether I correctly generated...

kwonej0617

Dear xpore team, I have downloaded xpore paper's dRNA-seq data consisting of fast5 (ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR470/ERR4706254/HEK293T-Mettl3-KO-rep1.tar.gz) and basecalled fastq files (ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR470/ERR4706158/HEK293T-Mettl3-KO-rep1.fastq.gz) from . Then, I ran a job using nanopolish with the...

rezarahman12

Hi, I have downloaded the fast5 files of the xpore paper from ENA. HEK293T-Mettl3-KO-rep2.tar.gz is downloaded using the below command- wget ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR470/ERR4708848/HEK293T-Mettl3-KO-rep2.tar.gz then I ran the command tar: -xvzf HEK293T-Mettl3-KO-rep2.tar.gz...

rezarahman12