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HEK293T data fast5 untar problem

Open rezarahman12 opened this issue 3 years ago • 0 comments
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Hi,

I have downloaded the fast5 files of the xpore paper from ENA. HEK293T-Mettl3-KO-rep2.tar.gz is downloaded using the below command-

wget ftp://ftp.sra.ebi.ac.uk/vol1/run/ERR470/ERR4708848/HEK293T-Mettl3-KO-rep2.tar.gz

then I ran the command tar: -xvzf HEK293T-Mettl3-KO-rep2.tar.gz

After running the above, I saw the directory- "20190805_Sho_M3-1" was created which contains another directory "M3-1". then I check inside M3-1 another directory "20190805_0636_MN19344_FAK28957_6cdec02f". Then I check another directory "fast5", which contains all .fast5 files.

I checked .e file of job submission which showed the below error:

gzip: stdin: invalid compressed data--crc error tar: Child returned status 1 tar: Error is not recoverable: exiting now

Could you please tell how to solve this problem? Kind regards Reza

rezarahman12 avatar Oct 06 '22 06:10 rezarahman12