xpore
xpore copied to clipboard
GoekeLab
Identification of differential RNA modifications from nanopore direct RNA sequencing
Hello, I am trying to differentiate between nucleoside analogous and natural nucleotides based on the difference in electrical charge. But I have a couple of concerns: 1. How does xpore...
Hello I kept receiving error messages and empty output files (data_idex data.json、data.log、data.readcount eventalign.index）。 After I finish running `xpore dataprep --eventalign reads-ref.eventalign.txt --gtf_or_gff NL4-3.gtf --transcript_fasta NL4-3.fa --out_dir dataprep --genome_`，an error warning...
Hello! Thanks for your powerful tool! I have a question about the detected site, is there any way to know that the modification type? Let's say we have several NNGNN...
hello developer! i ran xpore dataprep wiht my direct RNAseq data generated with SQK-RNA004 kit but the output file is empty and i cannot identify what the problem is.. can...
Hi, I'm trying to run xpore diffmod on some RNA004 data and am specifically providing the RNA004 kmer model (https://github.com/GoekeLab/xpore/blob/RNA004_kmer_model/xpore/diffmod/RNA004_5mer_model.txt) in the xpore diffmod config.yml when running xpore diffmod. However,...
In previous discussions and on your documentation you mention you can use xpore postprocessing to "filter out those positions whose mod_assigment values are not in line with those of the...
