Siddhesh Thakur

Auto Flattening of features

1

Hi, I found this annoying feature/bug as one may like to: ``` def forward(self, x): x = self.features(x) if self.pool is not None: x = self.pool(x) if self.dropout is not...

This is a PR where [black](https://github.com/psf/black) was applied essentially reformatting the code. This PR can be considered only if some standards are important to be followed. If not, please feel...

Adding connected component analysis as a post-processing step

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Adds connected component analysis ## Proposed Changes ## Checklist - [x] I have read the [`CONTRIBUTING`](https://github.com/CBICA/GaNDLF/blob/master/CONTRIBUTING.md) guide - [x] My PR is based from the [current GaNDLF master ](https://garygregory.wordpress.com/2016/11/10/how-to-catch-up-my-git-fork-to-master/) -...

Sort imports following PEP-8 to improve readability

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This improves the readability of imports and follows the PEP-8 [import](https://peps.python.org/pep-0008/#imports) guidelines ## Proposed Changes Sorted all imports in gandlf ## Checklist - [x] I have read the [`CONTRIBUTING`](https://github.com/CBICA/GaNDLF/blob/master/CONTRIBUTING.md) guide...

Updating metric calculation

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**Is your feature request related to a problem? Please describe.** Computing metrics for classification/segmentation problems based on the entire cohort which is not mathematically linear in nature. **Describe the solution...

added augmentation for hed

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## Proposed Changes - Added H&E based augmentations for Histopathology images (can be used for other RGB images) - Solves #510 ## Checklist - [x] I have read the [`CONTRIBUTING`](https://github.com/CBICA/GaNDLF/blob/master/CONTRIBUTING.md)...

**Is your feature request related to a problem? Please describe.** Stain variation is a phenomenon observed when distinct institutions for pathology stain tissue slides that exhibit similar but not identical...

Added new losses

Added automatic linting to workflows

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Fixes #ISSUE_NUMBER ## Proposed Changes - ## Checklist - [ ] I have read the [`CONTRIBUTING`](https://github.com/CBICA/GaNDLF/blob/master/CONTRIBUTING.md) guide - [ ] My PR is based from the [current GaNDLF master ](https://garygregory.wordpress.com/2016/11/10/how-to-catch-up-my-git-fork-to-master/)...

I have been trying to generate the IDH1 status excel sheet with the patient ID, IDH1 status and Age, but I have failed to do so, Can you tell me...