GaNDLF icon indicating copy to clipboard operation
GaNDLF copied to clipboard

added augmentation for hed

Open Geeks-Sid opened this issue 1 year ago • 1 comments

Proposed Changes

  • Added H&E based augmentations for Histopathology images (can be used for other RGB images)
  • Solves #510

Checklist

  • [x] I have read the CONTRIBUTING guide
  • [x] My PR is based from the current GaNDLF master
  • [x] Non-breaking change (does not break existing functionality): provide as many details as possible for any breaking change
  • [x] Function/class source code documentation added/updated
  • [x] Code has been blacked for style consistency
  • [x] If applicable, version information has been updated in GANDLF/version.py
  • [x] If adding a git submodule, add to list of exceptions for black styling in pyproject.toml file
  • [ ] Usage documentation has been updated, if appropriate
  • [x] History has been updated, if appropriate
  • [x] Tests added or modified to cover the changes; if coverage is reduced, please give explanation
  • [x] If customized dependency installation is required (i.e., a separate pip install step is needed for PR to be functional), please ensure it is reflected in all the files that control the CI, namely: python-test.yml, and all docker files [1,2,3,4]

Geeks-Sid avatar Oct 19 '22 17:10 Geeks-Sid

MLCommons CLA bot:
Thank you very much for your submission, we really appreciate it. Before we can accept your contribution, we ask that you sign the MLCommons CLA (Apache 2). Please use this [Google form] (https://forms.gle/Ew1KkBVpyeJDuRw67) to initiate authorization. If you are from an MLCommons member organization, we will request that you be added to the CLA. If you are not from a member organization, we will email you a CLA to sign. For any questions, please contact [email protected].
0 out of 1 committers have signed the MLCommons CLA.
:x: @Geeks-Sid
You can retrigger this bot by commenting recheck in this Pull Request

github-actions[bot] avatar Oct 19 '22 17:10 github-actions[bot]

Codecov Report

Merging #509 (9d545be) into master (f98bf01) will decrease coverage by 1.69%. The diff coverage is 22.89%.

@@            Coverage Diff             @@
##           master     #509      +/-   ##
==========================================
- Coverage   93.60%   91.91%   -1.70%     
==========================================
  Files         106      107       +1     
  Lines        6724     6886     +162     
==========================================
+ Hits         6294     6329      +35     
- Misses        430      557     +127     
Flag Coverage Δ
unittests 91.91% <22.89%> (-1.70%) :arrow_down:

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
GANDLF/data/augmentation/rgb_augs.py 35.46% <18.97%> (-64.54%) :arrow_down:
GANDLF/parseConfig.py 74.77% <20.00%> (-2.56%) :arrow_down:
GANDLF/utils/exceptions.py 61.53% <61.53%> (ø)
GANDLF/data/augmentation/__init__.py 100.00% <100.00%> (ø)
...NDLF/data/preprocessing/template_matching/utils.py 97.67% <0.00%> (+2.32%) :arrow_up:

:mega: We’re building smart automated test selection to slash your CI/CD build times. Learn more

codecov[bot] avatar Oct 24 '22 14:10 codecov[bot]