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Error Installing using Docker

Open AnnaFire opened this issue 6 months ago • 0 comments

Hello,

I get at stept 14/17 the following error

=> ERROR [14/17] RUN make clean

[14/17] RUN make clean: 0.253 cd src && make clean 0.254 make[1]: Entering directory '/root/augustus/src' 0.256 rm -f ../bin/* augustus etraining prepareAlign fastBlockSearch pp_simScore load2db getSeq load2sqlitedb getSeq genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o parser/parse.o scanner/lex.o genomicMSA.o geneMSA.o contTimeMC.o codonevo.o codonevodiscr.o compgenepred.o phylotree.o orthograph.o orthoexon.o alignment.o speciesgraph.o codonMSA.o train_logReg_param.o tokenizer.o sqliteDB.o dummy.o commontrain.o igenictrain.o introntrain.o exontrain.o utrtrain.o pp_fastBlockSearcher.o cxxflags 0.257 cd googletest && make clean 0.259 make[2]: Entering directory '/root/augustus/src/googletest' 0.259 rm -f *.o 0.260 make[2]: Leaving directory '/root/augustus/src/googletest' 0.261 cd unittests && make clean 0.262 make[2]: Entering directory '/root/augustus/src/unittests' 0.263 rm -f *.o unittests 0.264 make[2]: Leaving directory '/root/augustus/src/unittests' 0.265 make[1]: Leaving directory '/root/augustus/src' 0.265 cd auxprogs && make clean 0.267 make[1]: Entering directory '/root/augustus/auxprogs' 0.267 cd aln2wig; make clean; 0.268 make[2]: Entering directory '/root/augustus/auxprogs/aln2wig' 0.268 rm -f aln2wig aln2wig.o ../../bin/aln2wig 0.269 make[2]: Leaving directory '/root/augustus/auxprogs/aln2wig' 0.269 cd bam2hints; make clean; 0.270 make[2]: Entering directory '/root/augustus/auxprogs/bam2hints' 0.271 rm -f bam2hints.o bam2hints ../../bin/bam2hints 0.271 make[2]: Leaving directory '/root/augustus/auxprogs/bam2hints' 0.272 cd compileSpliceCands; make clean; 0.273 make[2]: Entering directory '/root/augustus/auxprogs/compileSpliceCands' 0.273 rm -f compileSpliceCands *.o ../../bin/compileSpliceCands 0.274 make[2]: Leaving directory '/root/augustus/auxprogs/compileSpliceCands' 0.274 cd filterBam; make clean; 0.276 make[2]: Entering directory '/root/augustus/auxprogs/filterBam' 0.276 (cd src; make clean;) 0.276 make[3]: Entering directory '/root/augustus/auxprogs/filterBam/src' 0.278 rm -f *~ filterBam.o initOptions.o printElapsedTime.o MatePairs.o PairednessCoverage.o BamToolsAccess.o 0.279 rm -f filterBam 0.279 rm -f ../../../bin/filterBam 0.280 make[3]: Leaving directory '/root/augustus/auxprogs/filterBam/src' 0.280 make[2]: Leaving directory '/root/augustus/auxprogs/filterBam' 0.280 cd homGeneMapping; make clean; 0.282 make[2]: Entering directory '/root/augustus/auxprogs/homGeneMapping' 0.283 cd src; make clean 0.284 make[3]: Entering directory '/root/augustus/auxprogs/homGeneMapping/src' 0.285 rm -f homGeneMapping gene.o genome.o sqliteDB.o 0.286 rm -f ../../../bin/homGeneMapping 0.286 make[3]: Leaving directory '/root/augustus/auxprogs/homGeneMapping/src' 0.286 if [ -n /usr/bin/python3 ] ; then cd ../../tests/short && ./execute_test.py --clean homGeneMapping ; fi 0.287 /usr/bin/env: 'python3\r': No such file or directory 0.287 make[2]: *** [Makefile:10: clean] Error 127 0.287 make[2]: Leaving directory '/root/augustus/auxprogs/homGeneMapping' 0.288 make[1]: *** [Makefile:18: clean] Error 2 0.288 make[1]: Leaving directory '/root/augustus/auxprogs' 0.288 make: *** [Makefile:20: clean] Error 2


Dockerfile:47

45 | # Build AUGUSTUS 46 | WORKDIR "/root/augustus" 47 | >>> RUN make clean 48 | RUN make 49 | RUN make install

ERROR: failed to solve: process "/bin/sh -c make clean" did not complete successfully: exit code: 2

Did I do something wrong? How can I solve this?

I hope you had a happy christmas und wish you a good start in the new year! -C

AnnaFire avatar Dec 27 '23 13:12 AnnaFire