goci
goci copied to clipboard
EBISPOT
GWAS Catalog Ontology and Curation Infrastructure
EFO sometimes obsoletes terms and replaces them with new ones. When obsolete terms have been used in the GWAS Catalog and not updated, this causes the data release to fail....
At the moment parent terms are only available in the search UI if they have been added to the database, i.e. directly annotated to a study. It would be useful...
The SNP validation seems to be incorrectly identifying SNPs as duplicates within the _same_ study, when they are actually present in more than one _different_ study. **Example** SNPs uploaded for...
Bumps [jackson-databind](https://github.com/FasterXML/jackson) from 2.9.9 to 2.12.7.1. Commits See full diff in compare view [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) You can trigger a rebase of this PR by commenting `@dependabot rebase`. [//]: #...
![dependabot[bot] avatar](https://avatars.githubusercontent.com/in/29110?v=4 "dependabot[bot] avatar"){kind=avatar}
We’ve been receiving the email saying Problem Determining Latest Ensembl Release. Checking the ensembl release check API, I can see its working.http://rest.ensembl.org/info/data/?content-type=application/json  The ensembl endpoint is...
Following on from goci#828 As a user I want the downloadable table of published summary statistics to include ftp path by default. Currently this can be included by selecting the...
OLS links on the trait page don't work, but only when it is HP terms. Examples below. https://www.ebi.ac.uk/gwas/efotraits/HP_0001891 https://www.ebi.ac.uk/gwas/efotraits/HP_0004398 https://www.ebi.ac.uk/gwas/efotraits/HP_0004398 https://www.ebi.ac.uk/gwas/efotraits/HP_0001634
EBI have requested that we archive any unused data to long term storage. We should archive any Catalog versions older than 1 year and develop a strategy for this process...
Detail pages in the UI have problems loading (especially in Chrome) due to data volume. This due to inefficient pagination. An acceptable solution for the details pages would be to...
When beta values are entered in the associations template, the spreadsheet is formatted with the beta column as text. This means that hyphens can be entered instead of minus signs...