histoCAT

histoCAT copied to clipboard

exporting gate as csv

1

Hello, I would like to export manual gates and phenograph clusters as csv files. I tried it but the HistoCAT in my computer is only able to export them as...

aleixriusr

Problems with histocat on M1 Mac, manual for histocat++

11

Hello, I am currently using a MacBook Pro M1 (2020) and was hoping to be able to use HistoCAT. Unfortunately the normal HistoCAT for Mac (1.761) doesn't work (the installer...

adoppeldy

Can't realize the Heatmap of interaction between the phenotypes in an image

1

Hello sir, In fact, I want to have this tableau of statistics for the interaction between phenotypes using the permutation test. But I really can't see how to get this....

Danmeierzozo

Load samples not working

1

I am using histoCAT 1.75 on a Windows 11. I am unable to load samples to analyse as nothing happens when I click on load samples. I've attached a screen...

ShwethaRaghunathan

Create multiple gates in histocat

1

Hi, I see this question has been asked before but I am not sure if the problem is solved now: I want to select certain cell populations by gating in...

TvCAms

issue with "merge samples" function using phenograph clusters

2

Hello, I'm having an issue with a specific histocat session I have open where I am unable to merge clusters generated from phenograph. I'd like to combine several clusters together...

jbogdanov1

How can I select cluster for neighborhood analysis?

1

Hi, I'm trying to run the neighborhood analysis, and I'm wondering if I can only select the wanted clusters from the phenograph results. Thank, Zing

DrZing

"Load Samples" will not work

3

Hi! I just downloaded the histoCAT_1.74_Windows10 version of histoCAT on my Windows 10 computer. I created object masks as previously done at my institution through CellProfiler to plug into histoCAT...

rsorenson6

Problems installing

2

I know there are issues installing HistoCAT on MacOS. However, I am having the same issue on my windows 10 computer - the installer launches but quits almost immediately after...

jsymington

Problems installing Histocat on Mac running Monterey

4

Hi, I am looking for assistance with installing histocat. I am using a 2020 MacBook Pro running macOS Monterey. Every time I try to install Histocat the installer keeps crashing....

LeoMv999