Benchmark-Models-PEtab

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For model selection https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004784

elbaraim

https://academic.oup.com/bioinformatics/article/36/2/594/5538985 Datasets 1 + 2 (See figure 4). Old version available at: https://github.com/ICB-DCM/CS_Signalling_ERBB_RAS_AKT/tree/master/SchmiesterSch2019/CCLE_MCLP

LeonardSchmiester

Additional Model: Jignesh H. Parmar & Pedro Mendes, PLoS CB, 2019

6

https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006680 The model is also available in BioModels

JanHasenauer

Add Fribourg et al. (2014)

5

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4012420/ SBML: https://www.ebi.ac.uk/biomodels/BIOMD0000000529#Overview Estimated complexity of implementation: low

JanHasenauer

Additional model: Casaletto, PNAS 2019

6

A new model in the d2d examples, potentially interesting to also implement it here? https://github.com/Data2Dynamics/d2d/tree/master/arFramework3/Examples/Casaletto_PNAS2019

LoosC

Labeling of preequilibration and simulation conditions

3

Can one use more informative names than `model1_data{1,2,3}`?

yannikschaelte

https://github.com/Data2Dynamics/d2d/tree/master/arFramework3/Examples/Toensing_InfectiousDisease_Zika_2018

JanHasenauer

https://github.com/Data2Dynamics/d2d/tree/master/arFramework3/Examples/Toensing_InfectiousDisease_BoardingSchool_2018

JanHasenauer

Automatic generation of general information file

6

JanHasenauer

https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0010721

JanHasenauer